Boyang Wang, Tingyu Zhang, Qingyuan Liu, Chayanis Sutcharitchan, Ziyi Zhou, Dingfan Zhang, Shao Li. Elucidating the role of artificial intelligence in drug development from the perspective of drug-target interactions[J]. Journal of Pharmaceutical Analysis. doi: 10.1016/j.jpha.2024.101144
Citation:
Boyang Wang, Tingyu Zhang, Qingyuan Liu, Chayanis Sutcharitchan, Ziyi Zhou, Dingfan Zhang, Shao Li. Elucidating the role of artificial intelligence in drug development from the perspective of drug-target interactions[J]. Journal of Pharmaceutical Analysis. doi: 10.1016/j.jpha.2024.101144
Boyang Wang, Tingyu Zhang, Qingyuan Liu, Chayanis Sutcharitchan, Ziyi Zhou, Dingfan Zhang, Shao Li. Elucidating the role of artificial intelligence in drug development from the perspective of drug-target interactions[J]. Journal of Pharmaceutical Analysis. doi: 10.1016/j.jpha.2024.101144
Citation:
Boyang Wang, Tingyu Zhang, Qingyuan Liu, Chayanis Sutcharitchan, Ziyi Zhou, Dingfan Zhang, Shao Li. Elucidating the role of artificial intelligence in drug development from the perspective of drug-target interactions[J]. Journal of Pharmaceutical Analysis. doi: 10.1016/j.jpha.2024.101144
Institute for TCM-X, MOE Key Laboratory of Bioinformatics, Bioinformatics Division, BNRist, Department of Automation, Tsinghua University, Beijing, 100084, China
Funds:
This work was supported by grants from the National Natural Science Foundation of China (Grant No.: T2341008).
Drug development remains a critical issue in the field of biomedicine. With the rapid advancement of information technologies such as artificial intelligence (AI) and the advent of the big data era, AI-assisted drug development has become a new trend, particularly in predicting drug-target associations. To address the challenge of drugtarget prediction, AI-driven models have emerged as powerful tools, offering innovative solutions by effectively extracting features from complex biological data; accurately modeling molecular interactions; and precisely predicting potential drug-target outcomes. Traditional machine learning, network-based, and advanced deep learning architectures such as convolutional neural networks (CNNs), graph convolutional networks (GCNs), and transformers each play a pivotal role. This review systematically compiles and evaluates AI algorithms for drug- and drug combination-target predictions, highlighting their theoretical frameworks, strengths, and limitations. CNNs effectively identify spatial patterns and molecular features critical for drug-target interactions. GCNs provide deep insights into molecular interactions via relational data, whereas transformers increase prediction accuracy by capturing complex dependencies within biological sequences. Network-based models offer a systematic perspective by integrating diverse data sources, and traditional machine learning efficiently handles large datasets to improve overall predictive accuracy. Collectively, these AI-driven methods are transforming drug-target predictions and advancing the development of personalized therapy. This review summarizes the application of AI in drug development, particularly in drug-target prediction, and offers recommendations on models and algorithms for researchers engaged in biomedical research. It also provides typical cases to better illustrate how AI can further accelerate development in the fields of biomedicine and drug discovery.